MethylSeekR
Segmentation of Bis-seq data
Bioconductor version: Release (3.17)
This is a package for the discovery of regulatory regions from Bis-seq data
Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler
Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>
Citation (from within R, enter
citation("MethylSeekR")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethylSeekR")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylSeekR")| MethylSeekR | R Script | |
| Reference Manual |
Details
| biocViews | DNAMethylation, MethylSeq, Sequencing, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (10.5 years) |
| License | GPL (>=2) |
| Depends | rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4) |
| Imports | IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2) |
| Linking To | |
| Suggests | BSgenome.Hsapiens.UCSC.hg18 |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | methylPipe, RnBeads |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MethylSeekR_1.40.0.tar.gz |
| Windows Binary | MethylSeekR_1.40.0.zip (64-bit only) |
| macOS Binary (x86_64) | MethylSeekR_1.40.0.tgz |
| macOS Binary (arm64) | MethylSeekR_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MethylSeekR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylSeekR |
| Bioc Package Browser | https://code.bioconductor.org/browse/MethylSeekR/ |
| Package Short Url | https://bioconductor.org/packages/MethylSeekR/ |
| Package Downloads Report | Download Stats |