MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MotifDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

A collection of PWMs	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	MotifAnnotation, Software
Version	1.42.0
In Bioconductor since	BioC 2.11 (R-2.15) (11 years)
License	Artistic-2.0 | file LICENSE
Depends	R (>= 3.5.0), methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biostrings
Imports	rtracklayer, splitstackshape
Linking To
Suggests	RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown
System Requirements
Enhances
URL

See More

Depends On Me	generegulation, motifbreakR, trena
Imports Me	rTRMui
Suggests Me	ATACseqQC, DiffLogo, enhancerHomologSearch, igvR, memes, MMDiff2, motifcounter, motifStack, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MotifDb_1.42.0.tar.gz
Windows Binary	MotifDb_1.42.0.zip
macOS Binary (x86_64)	MotifDb_1.42.0.tgz
macOS Binary (arm64)	MotifDb_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MotifDb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MotifDb
Bioc Package Browser	https://code.bioconductor.org/browse/MotifDb/
Package Short Url	https://bioconductor.org/packages/MotifDb/
Package Downloads Report	Download Stats