This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

rTRM

Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks

Bioconductor version: Release (3.17)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")
Introduction to rTRM HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.38.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 1.0)
Imports methods, AnnotationDbi, DBI, RSQLite
Linking To
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/ddiez/rTRM
Bug Reports https://github.com/ddiez/rTRM/issues
See More
Depends On Me
Imports Me rTRMui
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rTRM_1.38.0.tar.gz
Windows Binary rTRM_1.38.0.zip
macOS Binary (x86_64) rTRM_1.38.0.tgz
macOS Binary (arm64) rTRM_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rTRM
Bioc Package Browser https://code.bioconductor.org/browse/rTRM/
Package Short Url https://bioconductor.org/packages/rTRM/
Package Downloads Report Download Stats