PloGO2
Plot Gene Ontology and KEGG pathway Annotation and Abundance
Bioconductor version: Release (3.17)
Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.
Author: Dana Pascovici, Jemma Wu
Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>
Citation (from within R, enter
citation("PloGO2")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PloGO2")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PloGO2")| PloGO2_vignette.pdf | R Script | |
| PloGO2_with_WGNCA_vignette.pdf | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), GO.db, GOstats |
| Imports | lattice, httr, openxlsx, xtable |
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See More
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| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PloGO2_1.12.0.tar.gz |
| Windows Binary | PloGO2_1.12.0.zip |
| macOS Binary (x86_64) | PloGO2_1.12.0.tgz |
| macOS Binary (arm64) | PloGO2_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PloGO2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PloGO2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/PloGO2/ |
| Package Short Url | https://bioconductor.org/packages/PloGO2/ |
| Package Downloads Report | Download Stats |