GOstats

Tools for manipulating GO and microarrays

Bioconductor version: Release (3.17)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Sonali Kumari [ctb] (Converted GOvis vignette from Sweave to R Markdown / HTML.), Dennis Ndubi [ctb] (Converted GOstatsHyperG vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GOstats")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOstats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOstats")

Hypergeometric tests for less common model organisms	PDF	R Script
Hypergeometric Tests Using GOstats	HTML	R Script
Visualizing and Distances Using GO	HTML	R Script
Reference Manual	PDF

Details

biocViews	Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version	2.66.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18 years)
License	Artistic-2.0
Depends	R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.43.2), graph
Imports	methods, stats, stats4, AnnotationDbi(>= 0.0.89), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), AnnotationForge, Rgraphviz
Linking To
Suggests	hgu95av2.db(>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics, BiocStyle, knitr
System Requirements
Enhances
URL

Depends On Me	MineICA, PloGO2
Imports Me	affycoretools, attract, categoryCompare, GmicR, ideal, MIGSA, miRLAB, netZooR, pcaExplorer, ReportingTools, scTensor, SGCP
Suggests Me	a4, Category, fastLiquidAssociation, fgga, GSEAlm, interactiveDisplay, MineICA, MLP, qpgraph, RnBeads, safe
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOstats_2.66.0.tar.gz
Windows Binary	GOstats_2.66.0.zip
macOS Binary (x86_64)	GOstats_2.66.0.tgz
macOS Binary (arm64)	GOstats_2.66.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GOstats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOstats
Bioc Package Browser	https://code.bioconductor.org/browse/GOstats/
Package Short Url	https://bioconductor.org/packages/GOstats/
Package Downloads Report	Download Stats