SEPIRA

Systems EPigenomics Inference of Regulatory Activity

Bioconductor version: Release (3.17)

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]

Maintainer: Yuting Chen <cytwarmmay at hotmail.com>

Citation (from within R, enter citation("SEPIRA")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEPIRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEPIRA")

Introduction to `SEPIRA`	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription
Version	1.20.0
In Bioconductor since	BioC 3.7 (R-3.5) (5.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats
Linking To
Suggests	knitr, rmarkdown, testthat, igraph
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SEPIRA_1.20.0.tar.gz
Windows Binary	SEPIRA_1.20.0.zip (64-bit only)
macOS Binary (x86_64)	SEPIRA_1.20.0.tgz
macOS Binary (arm64)	SEPIRA_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SEPIRA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SEPIRA
Bioc Package Browser	https://code.bioconductor.org/browse/SEPIRA/
Package Short Url	https://bioconductor.org/packages/SEPIRA/
Package Downloads Report	Download Stats