altcdfenvs

alternative CDF environments (aka probeset mappings)

Bioconductor version: Release (3.17)

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("altcdfenvs")):

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("altcdfenvs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("altcdfenvs")

altcdfenvs	PDF	R Script
Alternative CDF environments for 2(or more)-genomes chips	PDF	R Script
Modifying existing CDF environments to make alternative CDF environments	PDF	R Script
Reference Manual	PDF

biocViews	Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version	2.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18 years)
License	GPL (>= 2)
Depends	R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Imports
Linking To
Suggests	plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
System Requirements
Enhances
URL

Follow Installation instructions to use this package in your R session.

Source Package	altcdfenvs_2.62.0.tar.gz
Windows Binary	altcdfenvs_2.62.0.zip
macOS Binary (x86_64)	altcdfenvs_2.62.0.tgz
macOS Binary (arm64)	altcdfenvs_2.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/altcdfenvs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/altcdfenvs
Bioc Package Browser	https://code.bioconductor.org/browse/altcdfenvs/
Package Short Url	https://bioconductor.org/packages/altcdfenvs/
Package Downloads Report	Download Stats