This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

makecdfenv

CDF Environment Maker

Bioconductor version: Release (3.17)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("makecdfenv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")
makecdfenv primer PDF R Script
Reference Manual PDF

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.76.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me altcdfenvs
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package makecdfenv_1.76.0.tar.gz
Windows Binary makecdfenv_1.76.0.zip (64-bit only)
macOS Binary (x86_64) makecdfenv_1.76.0.tgz
macOS Binary (arm64) makecdfenv_1.76.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/makecdfenv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/makecdfenv
Bioc Package Browser https://code.bioconductor.org/browse/makecdfenv/
Package Short Url https://bioconductor.org/packages/makecdfenv/
Package Downloads Report Download Stats