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biocGraph

Graph examples and use cases in Bioinformatics

Bioconductor version: Release (3.17)

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("biocGraph")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocGraph")
Examples of plotting graphs Using Rgraphviz PDF R Script
HOWTO layout pathways PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, Software, Visualization
Version 1.62.0
In Bioconductor since BioC 2.1 (R-2.6) (16 years)
License Artistic-2.0
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods
Linking To
Suggests fibroEset, geneplotter, hgu95av2.db
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me EnrichmentBrowser
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocGraph_1.62.0.tar.gz
Windows Binary biocGraph_1.62.0.zip
macOS Binary (x86_64) biocGraph_1.62.0.tgz
macOS Binary (arm64) biocGraph_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biocGraph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocGraph
Bioc Package Browser https://code.bioconductor.org/browse/biocGraph/
Package Short Url https://bioconductor.org/packages/biocGraph/
Package Downloads Report Download Stats