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fastLiquidAssociation

functions for genome-wide application of Liquid Association

Bioconductor version: Release (3.17)

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author: Tina Gunderson

Maintainer: Tina Gunderson <gunderson.tina at gmail.com>

Citation (from within R, enter citation("fastLiquidAssociation")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastLiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fastLiquidAssociation")
fastLiquidAssociation Vignette PDF R Script
Reference Manual PDF

Details

biocViews CellBiology, GeneExpression, Genetics, Pathways, Software
Version 1.36.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL-2
Depends methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils
Imports WGCNA, impute, preprocessCore
Linking To
Suggests GOstats, yeastCC, org.Sc.sgd.db
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fastLiquidAssociation_1.36.0.tar.gz
Windows Binary fastLiquidAssociation_1.36.0.zip
macOS Binary (x86_64) fastLiquidAssociation_1.36.0.tgz
macOS Binary (arm64) fastLiquidAssociation_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fastLiquidAssociation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fastLiquidAssociation
Bioc Package Browser https://code.bioconductor.org/browse/fastLiquidAssociation/
Package Short Url https://bioconductor.org/packages/fastLiquidAssociation/
Package Downloads Report Download Stats