This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

iCheck

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: Release (3.17)

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Citation (from within R, enter citation("iCheck")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")
iCheck PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL (>= 2)
Depends R (>= 3.2.0), Biobase, lumi, gplots
Imports stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCheck_1.30.0.tar.gz
Windows Binary iCheck_1.30.0.zip
macOS Binary (x86_64) iCheck_1.30.0.tgz
macOS Binary (arm64) iCheck_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCheck
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCheck
Bioc Package Browser https://code.bioconductor.org/browse/iCheck/
Package Short Url https://bioconductor.org/packages/iCheck/
Package Downloads Report Download Stats