mAPKL
A Hybrid Feature Selection method for gene expression data
Bioconductor version: Release (3.17)
We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.
Author: Argiris Sakellariou
Maintainer: Argiris Sakellariou <argisake at gmail.com>
Citation (from within R, enter
citation("mAPKL")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mAPKL")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, FeatureExtraction, GeneExpression, Microarray, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.6.0), Biobase |
| Imports | multtest, clusterSim, apcluster, limma, e1071, AnnotationDbi, methods, parmigene, igraph, reactome.db |
| Linking To | |
| Suggests | BiocStyle, knitr, mAPKLData, hgu133plus2.db, RUnit, BiocGenerics |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/mAPKL |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mAPKL |
| Package Short Url | https://bioconductor.org/packages/mAPKL/ |
| Package Downloads Report | Download Stats |