plyranges
A fluent interface for manipulating GenomicRanges
Bioconductor version: Release (3.17)
A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.
Author: Stuart Lee [aut, cre] 
, Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb]
Maintainer: Stuart Lee <stuart.andrew.lee at gmail.com>
citation("plyranges")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyranges")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyranges")| Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4) |
| Imports | methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils |
| Linking To | |
| Suggests | knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2 |
| System Requirements | |
| Enhances | |
| URL | |
| Bug Reports | https://github.com/sa-lee/plyranges |
See More
| Depends On Me | |
| Imports Me | BOBaFIT, BUSpaRse, cfDNAPro, dasper, fluentGenomics, InPAS, katdetectr, mariner, methylCC, multicrispr, nearBynding, nullranges, plotgardener |
| Suggests Me | CTCF, EpiCompare, extraChIPs, memes, svaNUMT, svaRetro |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plyranges_1.20.0.tar.gz |
| Windows Binary | plyranges_1.20.0.zip |
| macOS Binary (x86_64) | plyranges_1.20.0.tgz |
| macOS Binary (arm64) | plyranges_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plyranges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyranges |
| Bioc Package Browser | https://code.bioconductor.org/browse/plyranges/ |
| Package Short Url | https://bioconductor.org/packages/plyranges/ |
| Package Downloads Report | Download Stats |