This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

regsplice

L1-regularization based methods for detection of differential splicing

Bioconductor version: Release (3.17)

Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("regsplice")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("regsplice")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regsplice")
regsplice workflow HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, ImmunoOncology, Microarray, RNASeq, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License MIT + file LICENSE
Depends
Imports glmnet, SummarizedExperiment, S4Vectors, limma, edgeR, stats, pbapply, utils, methods
Linking To
Suggests testthat, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/lmweber/regsplice
Bug Reports https://github.com/lmweber/regsplice/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package regsplice_1.26.0.tar.gz
Windows Binary regsplice_1.26.0.zip
macOS Binary (x86_64) regsplice_1.26.0.tgz
macOS Binary (arm64) regsplice_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/regsplice
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/regsplice
Bioc Package Browser https://code.bioconductor.org/browse/regsplice/
Package Short Url https://bioconductor.org/packages/regsplice/
Package Downloads Report Download Stats