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tenXplore

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Release (3.17)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")
tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons HTML R Script
Reference Manual PDF

Details

biocViews DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 4.0), shiny, restfulSE(>= 0.99.12)
Imports methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
Linking To
Suggests org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tenXplore_1.22.0.tar.gz
Windows Binary tenXplore_1.22.0.zip
macOS Binary (x86_64) tenXplore_1.22.0.tgz
macOS Binary (arm64) tenXplore_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tenXplore
Bioc Package Browser https://code.bioconductor.org/browse/tenXplore/
Package Short Url https://bioconductor.org/packages/tenXplore/
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