SCATEData

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Bioconductor version: Release (3.17)

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]

Maintainer: Wenpin Hou <wp.hou3 at gmail.com>

Citation (from within R, enter citation("SCATEData")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCATEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCATEData")

1. SCATEData package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	ExperimentData, ExperimentHub
Version	1.10.0
License	MIT + file LICENSE
Depends	R (>= 3.5.0), ExperimentHub, GenomicAlignments, GenomicRanges, base
Imports	utils
Linking To
Suggests	knitr, rmarkdown
System Requirements
Enhances
URL
Bug Reports	https://github.com/Winnie09/SCATEData/issues

Depends On Me	SCATE
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SCATEData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SCATEData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SCATEData
Package Short Url	https://bioconductor.org/packages/SCATEData/
Package Downloads Report	Download Stats