This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

GENIE3

This is the development version of GENIE3; for the stable release version, see GENIE3.

GEne Network Inference with Ensemble of trees

Bioconductor version: Development (3.18)

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>

Citation (from within R, enter citation("GENIE3")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GENIE3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GPL (>= 2)
Depends
Imports stats, reshape2, dplyr
Linking To
Suggests knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me BioNERO, MetNet
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary GENIE3_1.23.0.zip
macOS Binary (x86_64) GENIE3_1.23.0.tgz
macOS Binary (arm64) GENIE3_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GENIE3
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GENIE3
Bioc Package Browser https://code.bioconductor.org/browse/GENIE3/
Package Short Url https://bioconductor.org/packages/GENIE3/
Package Downloads Report Download Stats