HTSeqGenie

This is the development version of HTSeqGenie; for the stable release version, see HTSeqGenie.

A NGS analysis pipeline.

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HTSeqGenie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual	PDF

Details

biocViews	Software
Version	4.31.1
In Bioconductor since	BioC 2.11 (R-2.15) (11 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), gmapR(>= 1.8.0), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3)
Imports	BiocGenerics(>= 0.2.0), S4Vectors(>= 0.9.25), IRanges(>= 1.21.39), GenomicRanges(>= 1.23.21), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.7.7), GenomeInfoDb, SummarizedExperiment, methods
Linking To
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db, RUnit
System Requirements
Enhances
URL

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HTSeqGenie
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HTSeqGenie
Package Short Url	https://bioconductor.org/packages/HTSeqGenie/
Package Downloads Report	Download Stats