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HelloRanges

This is the development version of HelloRanges; for the stable release version, see HelloRanges.

Introduce *Ranges to bedtools users

Bioconductor version: Development (3.18)

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("HelloRanges")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HelloRanges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL (>= 2)
Depends methods, BiocGenerics, S4Vectors(>= 0.17.39), IRanges(>= 2.13.12), GenomicRanges(>= 1.31.10), Biostrings(>= 2.41.3), BSgenome, GenomicFeatures(>= 1.31.5), VariantAnnotation(>= 1.19.3), Rsamtools, GenomicAlignments(>= 1.15.7), rtracklayer(>= 1.33.8), GenomeInfoDb, SummarizedExperiment, BiocIO
Imports docopt, stats, tools, utils
Linking To
Suggests HelloRangesData, BiocStyle
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me OMICsPCA
Suggests Me plyranges
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary HelloRanges_1.27.0.zip (64-bit only)
macOS Binary (x86_64) HelloRanges_1.27.0.tgz
macOS Binary (arm64) HelloRanges_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HelloRanges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HelloRanges
Bioc Package Browser https://code.bioconductor.org/browse/HelloRanges/
Package Short Url https://bioconductor.org/packages/HelloRanges/
Package Downloads Report Download Stats