Informeasure
This is the development version of Informeasure; for the stable release version, see Informeasure.
R implementation of Information measures
Bioconductor version: Development (3.18)
This package compiles most of the information measures currently available: mutual information, conditional mutual information, interaction information, partial information decomposition and part mutual information. All of these estimators can be used to quantify nonlinear dependence between variables in (biological regulatory) network inference. The first estimator is used to infer bivariate networks while the last four estimators are dedicated to analysis of trivariate networks.
Author: Chu Pan [aut, cre]
Maintainer: Chu Pan <chu.pan at hnu.edu.cn>
citation("Informeasure")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Informeasure")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneExpression, Network, NetworkInference, Software |
| Version | 1.11.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | entropy |
| Linking To | |
| Suggests | knitr, rmarkdown, testthat, SummarizedExperiment |
| System Requirements | |
| Enhances | |
| URL | https://github.com/chupan1218/Informeasure |
| Bug Reports | https://github.com/chupan1218/Informeasure/issues |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | Informeasure_1.11.0.zip |
| macOS Binary (x86_64) | Informeasure_1.11.0.tgz |
| macOS Binary (arm64) | Informeasure_1.11.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Informeasure |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Informeasure |
| Bioc Package Browser | https://code.bioconductor.org/browse/Informeasure/ |
| Package Short Url | https://bioconductor.org/packages/Informeasure/ |
| Package Downloads Report | Download Stats |