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LoomExperiment

This is the development version of LoomExperiment; for the stable release version, see LoomExperiment.

LoomExperiment container

Bioconductor version: Development (3.18)

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LoomExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LoomExperiment")
An introduction to the LoomExperiment class HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software
Version 1.19.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO
Imports DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils
Linking To
Suggests testthat, BiocStyle, knitr, rmarkdown, reticulate
System Requirements
Enhances
URL
See More
Depends On Me OSCA.intro
Imports Me
Suggests Me adverSCarial, hca
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LoomExperiment_1.19.0.tar.gz
Windows Binary LoomExperiment_1.19.0.zip
macOS Binary (x86_64) LoomExperiment_1.19.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LoomExperiment
Bioc Package Browser https://code.bioconductor.org/browse/LoomExperiment/
Package Short Url https://bioconductor.org/packages/LoomExperiment/
Package Downloads Report Download Stats