PROPS

This is the development version of PROPS; for the stable release version, see PROPS.

PRObabilistic Pathway Score (PROPS)

Bioconductor version: Development (3.18)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Citation (from within R, enter citation("PROPS")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PROPS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPS")

PRObabilistic Pathway Scores (PROPS)	HTML	R Script
Reference Manual	PDF

Details

biocViews	Bayesian, Classification, GeneExpression, Software
Version	1.23.0
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	GPL-2
Depends
Imports	bnlearn, reshape2, sva, stats, utils, Biobase
Linking To
Suggests	knitr, rmarkdown
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPS_1.23.0.tar.gz
Windows Binary	PROPS_1.23.0.zip
macOS Binary (x86_64)	PROPS_1.23.0.tgz
macOS Binary (arm64)	PROPS_1.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PROPS
Bioc Package Browser	https://code.bioconductor.org/browse/PROPS/
Package Short Url	https://bioconductor.org/packages/PROPS/
Package Downloads Report	Download Stats