RefPlus

This is the development version of RefPlus; for the stable release version, see RefPlus.

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: Development (3.18)

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RefPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.71.0
In Bioconductor since	BioC 2.0 (R-2.5) (16.5 years)
License	GPL (>= 2)
Depends	R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
Linking To
Suggests	affydata
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	RefPlus_1.71.0.zip (64-bit only)
macOS Binary (x86_64)	RefPlus_1.71.0.tgz
macOS Binary (arm64)	RefPlus_1.71.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RefPlus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RefPlus
Bioc Package Browser	https://code.bioconductor.org/browse/RefPlus/
Package Short Url	https://bioconductor.org/packages/RefPlus/
Package Downloads Report	Download Stats