This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Rtpca

This is the development version of Rtpca; for the stable release version, see Rtpca.

Thermal proximity co-aggregation with R

Bioconductor version: Development (3.18)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("Rtpca")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")
Introduction to Rtpca HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Proteomics, Software
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0.0), stats, dplyr, tidyr
Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
Linking To
Suggests knitr, BiocStyle, TPP, testthat, rmarkdown
System Requirements
Enhances
URL
Bug Reports https://support.bioconductor.org/
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rtpca_1.11.0.tar.gz
Windows Binary Rtpca_1.11.0.zip
macOS Binary (x86_64) Rtpca_1.11.0.tgz
macOS Binary (arm64) Rtpca_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rtpca
Bioc Package Browser https://code.bioconductor.org/browse/Rtpca/
Package Short Url https://bioconductor.org/packages/Rtpca/
Package Downloads Report Download Stats