This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

TnT

This is the development version of TnT; for the stable release version, see TnT.

Interactive Visualization for Genomic Features

Bioconductor version: Development (3.18)

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")
Introduction to TnT HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License AGPL-3
Depends R (>= 3.4), GenomicRanges
Imports methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
Linking To
Suggests GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/Marlin-Na/TnT
Bug Reports https://github.com/Marlin-Na/TnT/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TnT_1.23.0.tar.gz
Windows Binary TnT_1.23.0.zip
macOS Binary (x86_64) TnT_1.23.0.tgz
macOS Binary (arm64) TnT_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TnT
Bioc Package Browser https://code.bioconductor.org/browse/TnT/
Package Short Url https://bioconductor.org/packages/TnT/
Package Downloads Report Download Stats