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affxparser

This is the development version of affxparser; for the stable release version, see affxparser.

Affymetrix File Parsing SDK

Bioconductor version: Development (3.18)

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("affxparser")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affxparser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.73.0
In Bioconductor since BioC 1.7 (R-2.2) (18 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports
Linking To
Suggests R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles
System Requirements
Enhances
URL https://github.com/HenrikBengtsson/affxparser
Bug Reports https://github.com/HenrikBengtsson/affxparser/issues
See More
Depends On Me ITALICS, pdInfoBuilder
Imports Me affyILM, cn.farms, crossmeta, EventPointer, GCSscore, GeneRegionScan, ITALICS, oligo
Suggests Me TIN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affxparser_1.73.0.tar.gz
Windows Binary affxparser_1.73.0.zip (64-bit only)
macOS Binary (x86_64) affxparser_1.73.0.tgz
macOS Binary (arm64) affxparser_1.73.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affxparser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affxparser
Bioc Package Browser https://code.bioconductor.org/browse/affxparser/
Package Short Url https://bioconductor.org/packages/affxparser/
Package Downloads Report Download Stats