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affyILM

This is the development version of affyILM; for the stable release version, see affyILM.

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: Development (3.18)

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>

Citation (from within R, enter citation("affyILM")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affyILM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyILM")
affyILM1.3.0 PDF R Script
Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.53.0
In Bioconductor since BioC 2.6 (R-2.11) (13.5 years)
License GPL-3
Depends R (>= 2.10.0), methods, gcrma
Imports affxparser(>= 1.16.0), affy, graphics, Biobase
Linking To
Suggests AffymetrixDataTestFiles, hgfocusprobe
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyILM_1.53.0.tar.gz
Windows Binary affyILM_1.53.0.zip
macOS Binary (x86_64) affyILM_1.53.0.tgz
macOS Binary (arm64) affyILM_1.53.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyILM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyILM
Bioc Package Browser https://code.bioconductor.org/browse/affyILM/
Package Short Url https://bioconductor.org/packages/affyILM/
Package Downloads Report Download Stats