This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

GCSscore

This is the development version of GCSscore; for the stable release version, see GCSscore.

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Bioconductor version: Development (3.18)

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Citation (from within R, enter citation("GCSscore")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.15.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL (>=3)
Depends R (>= 3.6)
Imports BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
Linking To
Suggests siggenes, GEOquery, R.utils
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary GCSscore_1.15.0.zip
macOS Binary (x86_64) GCSscore_1.15.0.tgz
macOS Binary (arm64) GCSscore_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCSscore
Bioc Package Browser https://code.bioconductor.org/browse/GCSscore/
Package Short Url https://bioconductor.org/packages/GCSscore/
Package Downloads Report Download Stats