This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

discordant

This is the development version of discordant; for the stable release version, see discordant.

The Discordant Method: A Novel Approach for Differential Correlation

Bioconductor version: Development (3.18)

Discordant is an R package that identifies pairs of features that correlate differently between phenotypic groups, with application to -omics data sets. Discordant uses a mixture model that “bins” molecular feature pairs based on their type of coexpression or coabbundance. Algorithm is explained further in "Differential Correlation for Sequencing Data"" (Siska et al. 2016).

Author: Charlotte Siska [aut], McGrath Max [aut, cre], Katerina Kechris [aut, cph, ths]

Maintainer: McGrath Max <max.mcgrath at ucdenver.edu>

Citation (from within R, enter citation("discordant")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("discordant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("discordant")
The discordant R Package: A Novel Approach to Differential Correlation HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiologicalQuestion, Genetics, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod, mRNAMicroarray
Version 1.25.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL-3
Depends R (>= 4.1.0)
Imports Rcpp, Biobase, stats, biwt, gtools, MASS, tools, dplyr, methods, utils
Linking To Rcpp
Suggests BiocStyle, knitr, testthat (>= 3.0.0)
System Requirements
Enhances
URL https://github.com/siskac/discordant
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package discordant_1.25.0.tar.gz
Windows Binary discordant_1.25.0.zip
macOS Binary (x86_64) discordant_1.25.0.tgz
macOS Binary (arm64) discordant_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/discordant
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/discordant
Bioc Package Browser https://code.bioconductor.org/browse/discordant/
Package Short Url https://bioconductor.org/packages/discordant/
Package Downloads Report Download Stats