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epivizrData

This is the development version of epivizrData; for the stable release version, see epivizrData.

Data Management API for epiviz interactive visualization app

Bioconductor version: Development (3.18)

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epivizrData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")
epivizrData Usage HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Infrastructure, Software, Visualization
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License MIT + file LICENSE
Depends R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase
Imports S4Vectors, GenomicRanges, SummarizedExperiment(>= 0.2.0), OrganismDbi, GenomicFeatures, GenomeInfoDb, IRanges, ensembldb
Linking To
Suggests testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats
System Requirements
Enhances
URL http://epiviz.github.io
Bug Reports https://github.com/epiviz/epivizrData/issues
See More
Depends On Me
Imports Me epivizr, epivizrChart, scTreeViz
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrData_1.29.0.tar.gz
Windows Binary epivizrData_1.29.0.zip (64-bit only)
macOS Binary (x86_64) epivizrData_1.29.0.tgz
macOS Binary (arm64) epivizrData_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epivizrData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrData
Bioc Package Browser https://code.bioconductor.org/browse/epivizrData/
Package Short Url https://bioconductor.org/packages/epivizrData/
Package Downloads Report Download Stats