farms

This is the development version of farms; for the stable release version, see farms.

FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: Development (3.18)

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Citation (from within R, enter citation("farms")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version	1.53.0
In Bioconductor since	BioC 2.7 (R-2.12) (13 years)
License	LGPL (>= 2.1)
Depends	R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports	affy, MASS, Biobase(>= 1.13.41), methods, graphics
Linking To
Suggests	affydata, Biobase, utils
System Requirements
Enhances
URL	http://www.bioinf.jku.at/software/farms/farms.html

Depends On Me
Imports Me
Suggests Me	DEqMS
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	farms_1.53.0.zip
macOS Binary (x86_64)	farms_1.53.0.tgz
macOS Binary (arm64)	farms_1.53.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/farms
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/farms
Bioc Package Browser	https://code.bioconductor.org/browse/farms/
Package Short Url	https://bioconductor.org/packages/farms/
Package Downloads Report	Download Stats