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gDR

This is the development version of gDR; to use it, please install the devel version of Bioconductor.

Umbrella package for R packages in the gDR suite

Bioconductor version: Development (3.18)

Package is a part of the gDR suite. It provides info about processing functions and utilities from individual gDR packages. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDR")
Running the drug response processing pipeline HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Software
Version 0.99.6
In Bioconductor since BioC 3.18 (R-4.3)
License Artistic-2.0
Depends R (>= 4.2), gDRcore(>= 0.99.12), gDRimport(>= 0.99.10), gDRutils(>= 0.99.13)
Imports
Linking To
Suggests BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 0.99.11), gDRtestData(>= 0.99.11), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDR_0.99.6.tar.gz
Windows Binary gDR_0.99.6.zip
macOS Binary (x86_64) gDR_0.99.6.tgz
macOS Binary (arm64) gDR_0.99.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/gDR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDR
Bioc Package Browser https://code.bioconductor.org/browse/gDR/
Package Short Url https://bioconductor.org/packages/gDR/
Package Downloads Report Download Stats