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gDRutils

This is the development version of gDRutils; to use it, please install the devel version of Bioconductor.

A package with helper functions for processing drug response data

Bioconductor version: Development (3.18)

This package contains utility functions used throughout the gDR platform. Contaion many helper functions for maniplating data, including e.g. converting and validating. This package also has the necessary default constants for gDR platform.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRutils")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRutils")
gDRutils HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 0.99.25
In Bioconductor since BioC 3.18 (R-4.3)
License Artistic-2.0
Depends R (>= 4.2)
Imports BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment
Linking To
Suggests BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml
System Requirements
Enhances
URL
See More
Depends On Me gDR
Imports Me gDRcore, gDRimport
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDRutils_0.99.25.tar.gz
Windows Binary gDRutils_0.99.25.zip
macOS Binary (x86_64) gDRutils_0.99.25.tgz
macOS Binary (arm64) gDRutils_0.99.25.tgz
Source Repository git clone https://git.bioconductor.org/packages/gDRutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDRutils
Bioc Package Browser https://code.bioconductor.org/browse/gDRutils/
Package Short Url https://bioconductor.org/packages/gDRutils/
Package Downloads Report Download Stats