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iSEEindex

This is the development version of iSEEindex; to use it, please install the devel version of Bioconductor.

iSEE extension for a landing page to a custom collection of data sets

Bioconductor version: Development (3.18)

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

Author: Kevin Rue-Albrecht [aut, cre] , Thomas Sandmann [ctb] , Denali Therapeutics [fnd]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEindex")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEindex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEindex")
Adding custom header and footer to the landing page HTML R Script
Implementing custom iSEEindex resources HTML R Script
Introduction to iSEEindex HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 0.99.13
In Bioconductor since BioC 3.18 (R-4.3)
License Artistic-2.0
Depends SummarizedExperiment, SingleCellExperiment
Imports BiocFileCache, DT, iSEE, methods, paws.storage, rintrojs, shiny, shinydashboard, shinyjs, stringr, urltools, utils
Linking To
Suggests BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), yaml
System Requirements
Enhances
URL https://github.com/iSEE/iSEEindex
Bug Reports https://support.bioconductor.org/t/iSEEindex
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEindex_0.99.13.tar.gz
Windows Binary iSEEindex_0.99.13.zip (64-bit only)
macOS Binary (x86_64) iSEEindex_0.99.13.tgz
macOS Binary (arm64) iSEEindex_0.99.13.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSEEindex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEindex
Bioc Package Browser https://code.bioconductor.org/browse/iSEEindex/
Package Short Url https://bioconductor.org/packages/iSEEindex/
Package Downloads Report Download Stats