This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

infinityFlow

This is the development version of infinityFlow; for the stable release version, see infinityFlow.

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: Development (3.18)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")
Basic usage of the infinityFlow package HTML R Script
Training non default regression models HTML R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0.0), flowCore
Imports stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
Linking To
Suggests knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package infinityFlow_1.11.0.tar.gz
Windows Binary infinityFlow_1.11.0.zip (64-bit only)
macOS Binary (x86_64) infinityFlow_1.11.0.tgz
macOS Binary (arm64) infinityFlow_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/infinityFlow
Bioc Package Browser https://code.bioconductor.org/browse/infinityFlow/
Package Short Url https://bioconductor.org/packages/infinityFlow/
Package Downloads Report Download Stats