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mAPKL

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of mAPKL; for the stable release version, see mAPKL.

A Hybrid Feature Selection method for gene expression data

Bioconductor version: Development (3.18)

We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.

Author: Argiris Sakellariou

Maintainer: Argiris Sakellariou <argisake at gmail.com>

Citation (from within R, enter citation("mAPKL")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mAPKL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DifferentialExpression, FeatureExtraction, GeneExpression, Microarray, Software
Version 1.31.1
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.6.0), Biobase
Imports multtest, clusterSim, apcluster, limma, e1071, AnnotationDbi, methods, parmigene, igraph, reactome.db
Linking To
Suggests BiocStyle, knitr, mAPKLData, hgu133plus2.db, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
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Source Repository git clone https://git.bioconductor.org/packages/mAPKL
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mAPKL
Package Short Url https://bioconductor.org/packages/mAPKL/
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