This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

made4

This is the development version of made4; for the stable release version, see made4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: Development (3.18)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("made4")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")
Authoring R Markdown vignettes HTML R Script
Reference Manual PDF

Details

biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version 1.75.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
Linking To
Suggests affy, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL http://www.hsph.harvard.edu/aedin-culhane/
See More
Depends On Me
Imports Me deco, omicade4
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package made4_1.75.0.tar.gz
Windows Binary made4_1.75.0.zip
macOS Binary (x86_64) made4_1.75.0.tgz
macOS Binary (arm64) made4_1.75.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/made4
Bioc Package Browser https://code.bioconductor.org/browse/made4/
Package Short Url https://bioconductor.org/packages/made4/
Package Downloads Report Download Stats