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makecdfenv

This is the development version of makecdfenv; for the stable release version, see makecdfenv.

CDF Environment Maker

Bioconductor version: Development (3.18)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("makecdfenv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")
makecdfenv primer PDF R Script
Reference Manual PDF

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.77.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
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Depends On Me altcdfenvs
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package makecdfenv_1.77.0.tar.gz
Windows Binary makecdfenv_1.77.0.zip
macOS Binary (x86_64) makecdfenv_1.77.0.tgz
macOS Binary (arm64) makecdfenv_1.77.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/makecdfenv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/makecdfenv
Bioc Package Browser https://code.bioconductor.org/browse/makecdfenv/
Package Short Url https://bioconductor.org/packages/makecdfenv/
Package Downloads Report Download Stats