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moanin

This is the development version of moanin; for the stable release version, see moanin.

An R Package for Time Course RNASeq Data Analysis

Bioconductor version: Development (3.18)

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Citation (from within R, enter citation("moanin")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("moanin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("moanin")
The Moanin Package HTML R Script
Reference Manual PDF
README Text
LICENSE Text

Details

biocViews Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse
Version 1.9.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License BSD 3-clause License + file LICENSE
Depends R (>= 4.0), SummarizedExperiment, topGO, stats
Imports S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats
Linking To
Suggests testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, markdown, covr, BiocStyle
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package moanin_1.9.0.tar.gz
Windows Binary moanin_1.9.0.zip
macOS Binary (x86_64) moanin_1.9.0.tgz
macOS Binary (arm64) moanin_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/moanin
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/moanin
Bioc Package Browser https://code.bioconductor.org/browse/moanin/
Package Short Url https://bioconductor.org/packages/moanin/
Package Downloads Report Download Stats