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timecoursedata

This is the development version of timecoursedata; for the stable release version, see timecoursedata.

A data package for timecourse RNA-seq and microarray gene expression data sets

Bioconductor version: Development (3.18)

This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.

Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Citation (from within R, enter citation("timecoursedata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("timecoursedata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("timecoursedata")
timecoursedata: Time course gene expression datasets HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExpressionData, MicroarrayData, RNASeqData
Version 1.11.0
License BSD 3-clause License + file LICENSE
Depends R (>= 4.0), SummarizedExperiment
Imports
Linking To
Suggests testthat (>= 1.0.0), knitr, rmarkdown, markdown, covr, BiocStyle
System Requirements
Enhances
URL
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package timecoursedata_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/timecoursedata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/timecoursedata
Package Short Url https://bioconductor.org/packages/timecoursedata/
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