pepStat

This is the development version of pepStat; for the stable release version, see pepStat.

Statistical analysis of peptide microarrays

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pepStat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pepStat")

Full peptide microarray analysis	PDF	R Script
Reference Manual	PDF

Details

biocViews	Microarray, Preprocessing, Software
Version	1.35.0
In Bioconductor since	BioC 3.0 (R-3.1) (9 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), Biobase, IRanges
Imports	limma, fields, GenomicRanges, ggplot2, plyr, tools, methods, data.table
Linking To
Suggests	pepDat, Pviz, knitr, shiny
System Requirements
Enhances
URL	https://github.com/RGLab/pepStat

See More

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pepStat_1.35.0.tar.gz
Windows Binary	pepStat_1.35.0.zip
macOS Binary (x86_64)	pepStat_1.35.0.tgz
macOS Binary (arm64)	pepStat_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pepStat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pepStat
Bioc Package Browser	https://code.bioconductor.org/browse/pepStat/
Package Short Url	https://bioconductor.org/packages/pepStat/
Package Downloads Report	Download Stats