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plethy

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of plethy; for the stable release version, see plethy.

R framework for exploration and analysis of respirometry data

Bioconductor version: Development (3.18)

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.39.1
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-3
Depends R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
Linking To
Suggests RUnit, BiocStyle
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Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plethy
Package Short Url https://bioconductor.org/packages/plethy/
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