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qPLEXanalyzer

This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.

Tools for quantitative proteomics data analysis

Bioconductor version: Development (3.18)

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")
qPLEXanalyzer HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.19.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL-2
Depends R (>= 4.0), Biobase, MSnbase
Imports assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
Linking To
Suggests gridExtra, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
System Requirements
Enhances
URL
Bug Reports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
See More
Depends On Me qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qPLEXanalyzer_1.19.0.tar.gz
Windows Binary qPLEXanalyzer_1.19.0.zip
macOS Binary (x86_64) qPLEXanalyzer_1.19.0.tgz
macOS Binary (arm64) qPLEXanalyzer_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Bioc Package Browser https://code.bioconductor.org/browse/qPLEXanalyzer/
Package Short Url https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report Download Stats