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regsplice

This is the development version of regsplice; for the stable release version, see regsplice.

L1-regularization based methods for detection of differential splicing

Bioconductor version: Development (3.18)

Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("regsplice")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("regsplice")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regsplice")
regsplice workflow HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, ImmunoOncology, Microarray, RNASeq, Sequencing, Software
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License MIT + file LICENSE
Depends
Imports glmnet, SummarizedExperiment, S4Vectors, limma, edgeR, stats, pbapply, utils, methods
Linking To
Suggests testthat, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/lmweber/regsplice
Bug Reports https://github.com/lmweber/regsplice/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package regsplice_1.27.0.tar.gz
Windows Binary regsplice_1.27.0.zip (64-bit only)
macOS Binary (x86_64) regsplice_1.27.0.tgz
macOS Binary (arm64) regsplice_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/regsplice
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/regsplice
Bioc Package Browser https://code.bioconductor.org/browse/regsplice/
Package Short Url https://bioconductor.org/packages/regsplice/
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