This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

stageR

This is the development version of stageR; for the stable release version, see stageR.

stageR: stage-wise analysis of high throughput gene expression data in R

Bioconductor version: Development (3.18)

The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0

Author: Koen Van den Berge and Lieven Clement

Maintainer: Koen Van den Berge <koen.vdberge at gmail.com>

Citation (from within R, enter citation("stageR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("stageR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("stageR")
stageR: stage-wise analysis of high-throughput gene expression data in R HTML R Script
Reference Manual PDF

Details

biocViews Software, StatisticalMethod
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GNU General Public License version 3
Depends R (>= 3.4), SummarizedExperiment
Imports methods, stats
Linking To
Suggests knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma, DEXSeq, testthat
System Requirements
Enhances
URL
See More
Depends On Me rnaseqDTU
Imports Me
Suggests Me MethReg, satuRn
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package stageR_1.23.0.tar.gz
Windows Binary stageR_1.23.0.zip (64-bit only)
macOS Binary (x86_64) stageR_1.23.0.tgz
macOS Binary (arm64) stageR_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/stageR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/stageR
Bioc Package Browser https://code.bioconductor.org/browse/stageR/
Package Short Url https://bioconductor.org/packages/stageR/
Package Downloads Report Download Stats