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MethylSeqData

This is the development version of MethylSeqData; for the stable release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets

Bioconductor version: Development (3.18)

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MethylSeqData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")
User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData
Version 1.11.0
License CC0
Depends SummarizedExperiment
Imports ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils
Linking To
Suggests BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeqData_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MethylSeqData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethylSeqData
Package Short Url https://bioconductor.org/packages/MethylSeqData/
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