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MouseThymusAgeing

This is the development version of MouseThymusAgeing; for the stable release version, see MouseThymusAgeing.

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: Development (3.18)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")
Available datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version 1.9.0
License GPL-3
Depends SingleCellExperiment, SummarizedExperiment
Imports ExperimentHub, methods, BiocGenerics, S4Vectors
Linking To
Suggests knitr, scuttle, rmarkdown, BiocStyle
System Requirements
Enhances
URL
Bug Reports https://github.com/MarioniLab/MouseThymusAgeing/issues
See More
Depends On Me
Imports Me
Suggests Me miloR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseThymusAgeing_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url https://bioconductor.org/packages/MouseThymusAgeing/
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