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TCGAWorkflowData

This is the development version of TCGAWorkflowData; for the stable release version, see TCGAWorkflowData.

Data for TCGA Workflow

Bioconductor version: Development (3.18)

This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".

Author: Tiago Chedraoui Silva <tiagochst at gmail.com>

Maintainer: Tiago Chedraoui Silva <tiagochst at gmail.com>

Citation (from within R, enter citation("TCGAWorkflowData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TCGAWorkflowData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAWorkflowData")
'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages' HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData
Version 1.25.3
License GPL-3
Depends R (>= 3.5.0)
Imports SummarizedExperiment
Linking To
Suggests knitr, rmarkdown, pander, testthat, BiocStyle
System Requirements
Enhances
URL https://f1000research.com/articles/5-1542/v2
Bug Reports https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues
See More
Depends On Me
Imports Me TCGAWorkflow
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCGAWorkflowData_1.25.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TCGAWorkflowData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCGAWorkflowData
Package Short Url https://bioconductor.org/packages/TCGAWorkflowData/
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