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nullrangesData

This is the development version of nullrangesData; for the stable release version, see nullrangesData.

ExperimentHub datasets for the nullranges package

Bioconductor version: Development (3.18)

Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.

Author: Michael Love [aut, cre] , Wancen Mu [aut] , Eric Davis [aut] , Mikhail Dozmorov [aut]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("nullrangesData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nullrangesData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nullrangesData")
nullrangesData package HTML R Script
Reference Manual PDF

Details

biocViews ChIPSeqData, ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData
Version 1.7.0
License GPL-3
Depends R (>= 4.1.0), ExperimentHub, GenomicRanges, InteractionSet
Imports utils
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me iSEEhub, nullranges
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nullrangesData_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/nullrangesData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nullrangesData
Package Short Url https://bioconductor.org/packages/nullrangesData/
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