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iSEEhub

This is the development version of iSEEhub; for the stable release version, see iSEEhub.

iSEE for the Bioconductor ExperimentHub

Bioconductor version: Development (3.18)

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

Author: Kevin Rue-Albrecht [aut, cre]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEhub")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEhub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEhub")
Contributing to iSEEhub HTML R Script
Introduction to iSEEhub HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImmunoOncology Infrastructure, ShinyApps, SingleCell, Software
Version 1.3.2
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License Artistic-2.0
Depends SummarizedExperiment, SingleCellExperiment, ExperimentHub
Imports AnnotationHub, BiocManager, DT, iSEE, methods, rintrojs, S4Vectors, shiny, shinydashboard, shinyjs, utils
Linking To
Suggests BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData
System Requirements
Enhances BioPlex, biscuiteerData, bodymapRat, CLLmethylation, CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP, curatedMetagenomicData, curatedTCGAData, DMRcatedata, DuoClustering2018, easierData, emtdata, epimutacionsData, FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015, GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr, restfulSEData, RLHub, sesameData, SimBenchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialDmelxsim, STexampleData, TabulaMurisData, TabulaMurisSenisData, TENxVisiumData, tissueTreg, VectraPolarisData, xcoredata
URL https://github.com/iSEE/iSEEhub
Bug Reports https://support.bioconductor.org/t/iSEEhub
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEhub_1.3.2.tar.gz
Windows Binary iSEEhub_1.3.2.zip (64-bit only)
macOS Binary (x86_64) iSEEhub_1.3.2.tgz
macOS Binary (arm64) iSEEhub_1.3.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSEEhub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEhub
Bioc Package Browser https://code.bioconductor.org/browse/iSEEhub/
Package Short Url https://bioconductor.org/packages/iSEEhub/
Package Downloads Report Download Stats